IL_9NDP_049

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

9NDP|1|5|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_049 not in the Motif Atlas

Homologous match to IL_8GLP_050

Geometric discrepancy: 0.1819

The information below is about IL_8GLP_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73464.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9NDP|1|5|G|1360
9NDP|1|5|G|1361
*
9NDP|1|5|C|1376
9NDP|1|5|G|1377
9NDP|1|5|C|1378
9NDP|1|5|C|1379

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain L

eL13

Chain N

Ribosomal protein L15