IL_9NDP_071

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGG*UC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_071 not in the Motif Atlas

Geometric match to IL_8OI5_038

Geometric discrepancy: 0.2989

The information below is about IL_8OI5_038

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

9NDP|1|5|G|1758
9NDP|1|5|G|1759
9NDP|1|5|G|1760
*
9NDP|1|5|U|1773
9NDP|1|5|C|1774

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L10