IL_9NDP_086

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CCUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9NDP|1|5|U|2305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|5|C|2302
9NDP|1|5|C|2303
9NDP|1|5|U|2304
9NDP|1|5|U|2305
9NDP|1|5|G|2306
9NDP|1|5|A|2307
9NDP|1|5|A|2308
9NDP|1|5|G|2309
*
9NDP|1|5|U|2329
9NDP|1|5|G|2330
9NDP|1|5|G|2331
9NDP|1|5|A|2332
9NDP|1|5|G|2333

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain C

60S ribosomal protein L4

Chain P

Large ribosomal subunit protein uL22

Chain Y

uL24

Chain e

60S ribosomal protein L32