IL_9NDP_088

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|5|G|2358
9NDP|1|5|U|2359
9NDP|1|5|A|2360
9NDP|1|5|G|2361
9NDP|1|5|U|2362
9NDP|1|5|A|2363
9NDP|1|5|G|2364
*
9NDP|1|5|C|3858
9NDP|1|5|G|3859
9NDP|1|5|A|3860
9NDP|1|5|A|3861
9NDP|1|5|A|3862
9NDP|1|5|C|3863

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain NB

Myristoylated alanine-rich C-kinase substrate,X-box-binding protein 1, luminal form

Chain P

Large ribosomal subunit protein uL22