IL_9NDP_090

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUGAG*CGAAAG

Length

11 nucleotides

Bulged bases

9NDP|1|5|A|2512, 9NDP|1|5|A|2513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|5|C|2446
9NDP|1|5|U|2447
9NDP|1|5|G|2448
9NDP|1|5|A|2449
9NDP|1|5|G|2450
*
9NDP|1|5|C|2509
9NDP|1|5|G|2510
9NDP|1|5|A|2511
9NDP|1|5|A|2512
9NDP|1|5|A|2513
9NDP|1|5|G|2514

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain A

Ribosomal protein L8

Chain g

60S ribosomal protein L34

Chain j

Ribosomal protein L37

Chain l

eL39