IL_9NDP_104
3D structure
- PDB id
- 9NDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- 9NDP|1|5|G|3839
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NDP_104 not in the Motif Atlas
- Geometric match to IL_8GLP_305
- Geometric discrepancy: 0.0887
- The information below is about IL_8GLP_305
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.3
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 11
Unit IDs
9NDP|1|5|G|2847
9NDP|1|5|G|2848
9NDP|1|5|A|2849
9NDP|1|5|A|2850
9NDP|1|5|G|2851
9NDP|1|5|U|2852
9NDP|1|5|C|2853
9NDP|1|5|G|2854
9NDP|1|5|G|2855
*
9NDP|1|5|C|3837
9NDP|1|5|U|3838
9NDP|1|5|G|3839
9NDP|1|5|U|3840
9NDP|1|5|C|3841
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain V
- Ribosomal protein L23
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