IL_9NDP_110

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9NDP|1|5|A|3663, 9NDP|1|5|U|3679, 9NDP|1|5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|5|C|3660
9NDP|1|5|G|3661
9NDP|1|5|A|3662
9NDP|1|5|A|3663
9NDP|1|5|G|3664
9NDP|1|5|G|3665
*
9NDP|1|5|U|3677
9NDP|1|5|G|3678
9NDP|1|5|U|3679
9NDP|1|5|U|3680
9NDP|1|5|G|3681
9NDP|1|5|A|3682
9NDP|1|5|C|3683
9NDP|1|5|G|3684

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain K

Small subunit ribosomal RNA; SSU rRNA

Chain p

eL43