IL_9NDP_111

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

9NDP|1|5|C|3701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_111 not in the Motif Atlas

Homologous match to IL_9PN5_082

Geometric discrepancy: 0.0975

The information below is about IL_9PN5_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55206.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

9NDP|1|5|C|3700
9NDP|1|5|C|3701
9NDP|1|5|A|3702
9NDP|1|5|G|3703
*
9NDP|1|5|C|3749
9NDP|1|5|G|3750

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain K

Small subunit ribosomal RNA; SSU rRNA