IL_9NDP_115
3D structure
- PDB id
- 9NDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UCAAAGU*AAUGAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NDP_115 not in the Motif Atlas
- Homologous match to IL_9PN5_085
- Geometric discrepancy: 0.1902
- The information below is about IL_9PN5_085
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65359.4
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9NDP|1|5|U|3715
9NDP|1|5|C|3716
9NDP|1|5|A|3717
9NDP|1|5|A|3718
9NDP|1|5|A|3719
9NDP|1|5|G|3720
9NDP|1|5|U|3721
*
9NDP|1|5|A|3732
9NDP|1|5|A|3733
9NDP|1|5|U|3734
9NDP|1|5|G|3735
9NDP|1|5|A|3736
9NDP|1|5|A|3737
9NDP|1|5|G|3738
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain i
- 60S ribosomal protein L36
Coloring options: