IL_9NDP_117

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9NDP|1|5|A|3785, 9NDP|1|5|C|3791, 9NDP|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|5|C|3781
9NDP|1|5|C|3782
9NDP|1|5|A|3783
9NDP|1|5|A|3784
9NDP|1|5|A|3785
9NDP|1|5|U|3786
9NDP|1|5|G|3787
9NDP|1|5|C|3788
9NDP|1|5|C|3789
9NDP|1|5|U|3790
9NDP|1|5|C|3791
9NDP|1|5|G|3792
*
9NDP|1|5|C|3808
9NDP|1|5|G|3809
9NDP|1|5|C|3810
9NDP|1|5|G|3811

Current chains

Chain 5

28S rRNA

Nearby chains

Chain K

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41