IL_9NDP_121

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

9NDP|1|5|A|4385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_121 not in the Motif Atlas

Homologous match to IL_9H3G_103

Geometric discrepancy: 0.0927

The information below is about IL_9H3G_103

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_98469.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

37

Unit IDs

9NDP|1|5|G|3916
9NDP|1|5|A|3917
*
9NDP|1|5|U|4384
9NDP|1|5|A|4385
9NDP|1|5|C|4386
9NDP|1|5|C|4387

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain A

Ribosomal protein L8

Chain NB

Myristoylated alanine-rich C-kinase substrate,X-box-binding protein 1, luminal form