IL_9NDP_122

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

9NDP|1|5|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_122 not in the Motif Atlas

Homologous match to IL_8GLP_133

Geometric discrepancy: 0.0793

The information below is about IL_8GLP_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87316.4

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9NDP|1|5|U|3927
9NDP|1|5|A|3928
9NDP|1|5|G|3929
*
9NDP|1|5|U|4181
9NDP|1|5|G|4182
9NDP|1|5|G|4183
9NDP|1|5|G|4184

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain N

Ribosomal protein L15

Chain o

Ribosomal protein L36a