IL_9NDP_126
3D structure
- PDB id
- 9NDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CAG*CGUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NDP_126 not in the Motif Atlas
- Homologous match to IL_9PN5_095
- Geometric discrepancy: 0.1111
- The information below is about IL_9PN5_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14250.3
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 11
Unit IDs
9NDP|1|5|C|4243
9NDP|1|5|A|4244
9NDP|1|5|G|4245
*
9NDP|1|5|C|4263
9NDP|1|5|G|4264
9NDP|1|5|U|4265
9NDP|1|5|G|4266
9NDP|1|5|G|4267
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- Large ribosomal subunit protein uL18
- Chain J
- Ribosomal protein L11
- Chain T
- eL21
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