IL_9NDP_133

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

9NDP|1|5|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_133 not in the Motif Atlas

Homologous match to IL_9PN5_100

Geometric discrepancy: 0.2048

The information below is about IL_9PN5_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.4

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

25

Unit IDs

9NDP|1|5|G|4405
9NDP|1|5|U|4406
9NDP|1|5|G|4407
*
9NDP|1|5|U|4435
9NDP|1|5|U|4436
9NDP|1|5|U|4437
9NDP|1|5|U|4438
9NDP|1|5|U|4439

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain I

60S ribosomal protein L10