IL_9NDP_140

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

9NDP|1|5|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|5|U|4468
9NDP|1|5|U|4469
9NDP|1|5|G|4470
*
9NDP|1|5|C|4485
9NDP|1|5|C|4486
9NDP|1|5|A|4487
9NDP|1|5|A|4488
9NDP|1|5|G|4489

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

Large ribosomal subunit protein uL13

Chain m

Ubiquitin-ribosomal protein eL40 fusion protein