IL_9NDP_156

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGAAACG*CUCGCC

Length

13 nucleotides

Bulged bases

9NDP|1|5|C|4895, 9NDP|1|5|U|4925, 9NDP|1|5|C|4928

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|5|G|4890
9NDP|1|5|G|4891
9NDP|1|5|A|4892
9NDP|1|5|A|4893
9NDP|1|5|A|4894
9NDP|1|5|C|4895
9NDP|1|5|G|4896
*
9NDP|1|5|C|4924
9NDP|1|5|U|4925
9NDP|1|5|C|4926
9NDP|1|5|G|4927
9NDP|1|5|C|4928
9NDP|1|5|C|4929

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain M

60S ribosomal protein L14

Chain O

Large ribosomal subunit protein uL13