IL_9NDP_168

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

AUCUC*GAUCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_168 not in the Motif Atlas

Geometric match to IL_8QYX_168

Geometric discrepancy: 0.0979

The information below is about IL_8QYX_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58103.12

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

12

Unit IDs

9NDP|1|7|A|32
9NDP|1|7|U|33
9NDP|1|7|C|34
9NDP|1|7|U|35
9NDP|1|7|C|36
*
9NDP|1|7|G|41
9NDP|1|7|A|42
9NDP|1|7|U|43
9NDP|1|7|C|44
9NDP|1|7|U|45

Current chains

Chain 7

5S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain D

Large ribosomal subunit protein uL18

Chain J

Ribosomal protein L11