IL_9NDP_187
3D structure
- PDB id
- 9NDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CUGAC*GGAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NDP_187 not in the Motif Atlas
- Geometric match to IL_4WF9_093
- Geometric discrepancy: 0.2935
- The information below is about IL_4WF9_093
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.4
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
9NDP|1|K|C|188
9NDP|1|K|U|189
9NDP|1|K|G|190
9NDP|1|K|A|191
9NDP|1|K|C|192
*
9NDP|1|K|G|207
9NDP|1|K|G|208
9NDP|1|K|A|209
9NDP|1|K|U|210
9NDP|1|K|G|211
Current chains
- Chain K
- 18S rRNA
Nearby chains
- Chain CC
- 40S ribosomal protein S8
Coloring options: