IL_9NDP_192

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

9NDP|1|K|U|361, 9NDP|1|K|C|399, 9NDP|1|K|C|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|K|U|359
9NDP|1|K|A|360
9NDP|1|K|U|361
9NDP|1|K|C|362
9NDP|1|K|A|363
9NDP|1|K|A|364
*
9NDP|1|K|U|396
9NDP|1|K|G|397
9NDP|1|K|A|398
9NDP|1|K|C|399
9NDP|1|K|C|400
9NDP|1|K|A|401
9NDP|1|K|C|402
9NDP|1|K|G|403

Current chains

Chain K

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain CC

40S ribosomal protein S8

Chain EE

Ribosomal protein S11

Chain VV

uS12