IL_9NDP_203

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_203 not in the Motif Atlas

Geometric match to IL_8GLP_220

Geometric discrepancy: 0.1239

The information below is about IL_8GLP_220

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9NDP|1|K|U|566
9NDP|1|K|C|567
9NDP|1|K|C|568
9NDP|1|K|A|569
*
9NDP|1|K|U|581
9NDP|1|K|U|582
9NDP|1|K|A|583
9NDP|1|K|A|584

Current chains

Chain K

18S rRNA

Nearby chains

Chain DD

Ribosomal protein S9 (Predicted)

Chain NN

Small ribosomal subunit protein eS24