IL_9NDP_216

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_216 not in the Motif Atlas

Geometric match to IL_6IA2_005

Geometric discrepancy: 0.123

The information below is about IL_6IA2_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9NDP|1|K|G|874
9NDP|1|K|A|875
9NDP|1|K|C|876
*
9NDP|1|K|G|910
9NDP|1|K|C|911
9NDP|1|K|C|912

Current chains

Chain K

18S rRNA

Nearby chains

Chain BB

40S ribosomal protein S7

Chain EE

Ribosomal protein S11

Chain R

Ribosomal protein L19