IL_9NDP_221

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

9NDP|1|K|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_221 not in the Motif Atlas

Homologous match to IL_9PN5_185

Geometric discrepancy: 0.1563

The information below is about IL_9PN5_185

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

9NDP|1|K|C|931
9NDP|1|K|G|932
9NDP|1|K|G|933
9NDP|1|K|G|934
9NDP|1|K|G|935
*
9NDP|1|K|C|1007
9NDP|1|K|A|1008
9NDP|1|K|A|1009
9NDP|1|K|G|1010

Current chains

Chain K

18S rRNA

Nearby chains

Chain LL

Small ribosomal subunit protein eS26

Chain QQ

Ribosomal protein S13

Chain c

eL30

Chain u

40S ribosomal protein S3a