IL_9NDP_222
3D structure
- PDB id
- 9NDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UAU*AGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NDP_222 not in the Motif Atlas
- Geometric match to IL_7QUA_003
- Geometric discrepancy: 0.2275
- The information below is about IL_7QUA_003
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_01003.6
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 241
Unit IDs
9NDP|1|K|U|943
9NDP|1|K|A|944
9NDP|1|K|U|945
*
9NDP|1|K|A|981
9NDP|1|K|G|982
9NDP|1|K|A|983
Current chains
- Chain K
- 18S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain MM
- Small ribosomal subunit protein uS11
- Chain u
- 40S ribosomal protein S3a
Coloring options: