IL_9NDP_232

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

9NDP|1|K|G|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_232 not in the Motif Atlas

Homologous match to IL_9PN5_196

Geometric discrepancy: 0.1072

The information below is about IL_9PN5_196

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

77

Unit IDs

9NDP|1|K|G|1206
9NDP|1|K|G|1207
9NDP|1|K|A|1208
*
9NDP|1|K|U|1691
9NDP|1|K|U|1692

Current chains

Chain K

18S rRNA

Nearby chains

Chain 4

mRNA

Chain LL

Small ribosomal subunit protein eS26