IL_9NDP_238

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

ACAG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_238 not in the Motif Atlas

Geometric match to IL_6DTD_001

Geometric discrepancy: 0.3403

The information below is about IL_6DTD_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_10994.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9NDP|1|K|A|1291
9NDP|1|K|C|1292
9NDP|1|K|A|1293
9NDP|1|K|G|1294
*
9NDP|1|K|C|1305
9NDP|1|K|U|1306
9NDP|1|K|U|1307
9NDP|1|K|U|1308

Current chains

Chain K

18S rRNA

Nearby chains

Chain 0

Ribosomal protein S27a

Chain 9

eS29

Chain WW

uS19