IL_9NDP_241

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UGCAUGG*UCUGUGAUG

Length

16 nucleotides

Bulged bases

9NDP|1|K|C|1331, 9NDP|1|K|U|1494, 9NDP|1|K|G|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|K|U|1329
9NDP|1|K|G|1330
9NDP|1|K|C|1331
9NDP|1|K|A|1332
9NDP|1|K|U|1333
9NDP|1|K|G|1334
9NDP|1|K|G|1335
*
9NDP|1|K|U|1492
9NDP|1|K|C|1493
9NDP|1|K|U|1494
9NDP|1|K|G|1495
9NDP|1|K|U|1496
9NDP|1|K|G|1497
9NDP|1|K|A|1498
9NDP|1|K|U|1499
9NDP|1|K|G|1500

Current chains

Chain K

18S rRNA

Nearby chains

Chain 9

eS29

Chain GG

uS10

Chain SS

S10_plectin domain-containing protein

Chain w

Ribosomal protein S3