IL_9NDP_249

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_249 not in the Motif Atlas

Geometric match to IL_9AXU_007

Geometric discrepancy: 0.0853

The information below is about IL_9AXU_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9NDP|1|K|A|1537
9NDP|1|K|C|1538
9NDP|1|K|U|1539
*
9NDP|1|K|A|1594
9NDP|1|K|U|1595
9NDP|1|K|U|1596

Current chains

Chain K

18S rRNA

Nearby chains

Chain II

uS13

Chain OO

eS25

Chain PP

eS19

Chain y

Ribosomal protein S5