IL_9NDP_250

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GCUCAGCGUG*CCGUUGAACCC

Length

21 nucleotides

Bulged bases

9NDP|1|K|U|1585, 9NDP|1|K|G|1587

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|K|G|1541
9NDP|1|K|C|1542
9NDP|1|K|U|1543
9NDP|1|K|C|1544
9NDP|1|K|A|1545
9NDP|1|K|G|1546
9NDP|1|K|C|1547
9NDP|1|K|G|1548
9NDP|1|K|U|1549
9NDP|1|K|G|1550
*
9NDP|1|K|C|1582
9NDP|1|K|C|1583
9NDP|1|K|G|1584
9NDP|1|K|U|1585
9NDP|1|K|U|1586
9NDP|1|K|G|1587
9NDP|1|K|A|1588
9NDP|1|K|A|1589
9NDP|1|K|C|1590
9NDP|1|K|C|1591
9NDP|1|K|C|1592

Current chains

Chain K

18S rRNA

Nearby chains

Chain 9

eS29

Chain GG

uS10

Chain OO

eS25

Chain PP

eS19

Chain UU

uS9

Chain w

Ribosomal protein S3

Chain y

Ribosomal protein S5