IL_9NDP_261

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UUA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NDP_261 not in the Motif Atlas

Homologous match to IL_9PN5_227

Geometric discrepancy: 0.191

The information below is about IL_9PN5_227

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55553.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

6

Unit IDs

9NDP|1|K|U|1729
9NDP|1|K|U|1730
9NDP|1|K|A|1731
*
9NDP|1|K|U|1803
9NDP|1|K|U|1804
9NDP|1|K|G|1805

Current chains

Chain K

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain CC

40S ribosomal protein S8

Chain V

Ribosomal protein L23