IL_9NJF_001

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_001 not in the Motif Atlas

Homologous match to IL_4WF9_001

Geometric discrepancy: 0.0874

The information below is about IL_4WF9_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9NJF|1|R1|G|24
9NJF|1|R1|U|25
9NJF|1|R1|G|26
9NJF|1|R1|G|27
9NJF|1|R1|A|28
9NJF|1|R1|U|29
9NJF|1|R1|G|30
*
9NJF|1|R1|C|510
9NJF|1|R1|U|511
9NJF|1|R1|G|512
9NJF|1|R1|A|513
9NJF|1|R1|A|514
9NJF|1|R1|A|515
9NJF|1|R1|C|516

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 20

Large ribosomal subunit protein bL20

Chain 22

Large ribosomal subunit protein uL22

Chain 32

50S ribosomal protein L32