IL_9NJF_007

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_007 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0927

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9NJF|1|R1|C|239
9NJF|1|R1|C|240
9NJF|1|R1|A|241
9NJF|1|R1|G|242
9NJF|1|R1|U|243
9NJF|1|R1|A|244
9NJF|1|R1|G|245
*
9NJF|1|R1|C|253
9NJF|1|R1|G|254
9NJF|1|R1|A|255
9NJF|1|R1|A|256
9NJF|1|R1|C|257
9NJF|1|R1|G|258

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L15

Chain 35

Large ribosomal subunit protein bL35