IL_9NJF_010

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_010 not in the Motif Atlas

Homologous match to IL_5J7L_254

Geometric discrepancy: 0.1261

The information below is about IL_5J7L_254

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.3

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

9NJF|1|R1|U|293
9NJF|1|R1|A|294
9NJF|1|R1|G|295
*
9NJF|1|R1|C|343
9NJF|1|R1|A|344
9NJF|1|R1|A|345
9NJF|1|R1|A|346
9NJF|1|R1|A|347

Current chains

Chain R1

23S ribosomal RNA

Nearby chains