IL_9NJF_016

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9NJF|1|R1|G|801, 9NJF|1|R1|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_016 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1108

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9NJF|1|R1|G|674
9NJF|1|R1|A|675
9NJF|1|R1|A|676
9NJF|1|R1|A|677
9NJF|1|R1|C|678
*
9NJF|1|R1|G|799
9NJF|1|R1|A|800
9NJF|1|R1|G|801
9NJF|1|R1|A|802
9NJF|1|R1|U|803
9NJF|1|R1|A|804
9NJF|1|R1|G|805
9NJF|1|R1|C|806

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L15

Chain 4

Large ribosomal subunit protein uL4