IL_9NJF_021
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 9NJF|1|R1|G|776, 9NJF|1|R1|A|788, 9NJF|1|R1|A|789, 9NJF|1|R1|U|790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NJF_021 not in the Motif Atlas
- Geometric match to IL_5J7L_265
- Geometric discrepancy: 0.0986
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9NJF|1|R1|G|775
9NJF|1|R1|G|776
9NJF|1|R1|G|777
*
9NJF|1|R1|C|787
9NJF|1|R1|A|788
9NJF|1|R1|A|789
9NJF|1|R1|U|790
9NJF|1|R1|C|791
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L2
- Chain 22
- Large ribosomal subunit protein uL22
- Chain 34
- 50S ribosomal protein L34
- Chain 4
- Large ribosomal subunit protein uL4
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