IL_9NJF_026
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGGGUAG*CGAAUAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NJF_026 not in the Motif Atlas
- Homologous match to IL_5J7L_270
- Geometric discrepancy: 0.0718
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9NJF|1|R1|G|856
9NJF|1|R1|G|857
9NJF|1|R1|G|858
9NJF|1|R1|G|859
9NJF|1|R1|U|860
9NJF|1|R1|A|861
9NJF|1|R1|G|862
*
9NJF|1|R1|C|915
9NJF|1|R1|G|916
9NJF|1|R1|A|917
9NJF|1|R1|A|918
9NJF|1|R1|U|919
9NJF|1|R1|A|920
9NJF|1|R1|C|921
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 16
- 50S ribosomal protein L16
- Chain 27
- 50S ribosomal protein L27
- Chain 30
- 50S ribosomal protein L30
- Chain R2
- 5S ribosomal RNA; 5S rRNA
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