IL_9NJF_039

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_039 not in the Motif Atlas

Homologous match to IL_5J7L_283

Geometric discrepancy: 0.1634

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9NJF|1|R1|G|1038
9NJF|1|R1|A|1039
9NJF|1|R1|A|1040
9NJF|1|R1|G|1041
*
9NJF|1|R1|C|1114
9NJF|1|R1|G|1115
9NJF|1|R1|G|1116
9NJF|1|R1|C|1117

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16

Chain 25

Large ribosomal subunit protein bL25

Chain 36

50S ribosomal protein L36

Chain 6

Large ribosomal subunit protein uL6