IL_9NJF_044

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9NJF|1|R1|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_044 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1222

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9NJF|1|R1|C|1208
9NJF|1|R1|U|1209
9NJF|1|R1|G|1210
9NJF|1|R1|C|1211
9NJF|1|R1|G|1212
9NJF|1|R1|A|1213
9NJF|1|R1|A|1214
9NJF|1|R1|G|1215
*
9NJF|1|R1|U|1234
9NJF|1|R1|G|1235
9NJF|1|R1|G|1236
9NJF|1|R1|A|1237
9NJF|1|R1|G|1238

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 20

Large ribosomal subunit protein bL20