IL_9NJF_047

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

9NJF|1|R1|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_047 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.1696

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

9NJF|1|R1|C|1319
9NJF|1|R1|C|1320
9NJF|1|R1|A|1321
9NJF|1|R1|A|1322
9NJF|1|R1|C|1323
*
9NJF|1|R1|G|1331
9NJF|1|R1|G|1332
9NJF|1|R1|G|1333

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 22

Large ribosomal subunit protein uL22

Chain 23

Large ribosomal subunit protein uL23