IL_9NJF_051

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

9NJF|1|R1|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_051 not in the Motif Atlas

Homologous match to IL_9DFE_054

Geometric discrepancy: 0.2026

The information below is about IL_9DFE_054

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9NJF|1|R1|C|1417
9NJF|1|R1|G|1418
9NJF|1|R1|A|1419
9NJF|1|R1|A|1420
9NJF|1|R1|G|1421
*
9NJF|1|R1|C|1577
9NJF|1|R1|U|1578
9NJF|1|R1|A|1579
9NJF|1|R1|A|1580
9NJF|1|R1|G|1581

Current chains

Chain R1

23S ribosomal RNA

Nearby chains