IL_9NJF_052

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

9NJF|1|R1|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_052 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.1742

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

9NJF|1|R1|G|1432
9NJF|1|R1|A|1433
9NJF|1|R1|A|1434
9NJF|1|R1|G|1435
*
9NJF|1|R1|C|1557
9NJF|1|R1|C|1558
9NJF|1|R1|U|1559
9NJF|1|R1|G|1560
9NJF|1|R1|C|1561

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2