IL_9NJF_067

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_067 not in the Motif Atlas

Homologous match to IL_5J7L_310

Geometric discrepancy: 0.1138

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9NJF|1|R1|U|1720
9NJF|1|R1|G|1721
9NJF|1|R1|A|1722
9NJF|1|R1|G|1723
9NJF|1|R1|G|1724
*
9NJF|1|R1|U|1736
9NJF|1|R1|G|1737
9NJF|1|R1|G|1738
9NJF|1|R1|A|1739
9NJF|1|R1|G|1740

Current chains

Chain R1

23S ribosomal RNA

Nearby chains