IL_9NJF_073

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_073 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1131

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9NJF|1|R1|U|1851
9NJF|1|R1|U|1852
9NJF|1|R1|A|1853
9NJF|1|R1|A|1854
9NJF|1|R1|U|1855
9NJF|1|R1|U|1856
9NJF|1|R1|G|1857
9NJF|1|R1|A|1858
9NJF|1|R1|U|1859
9NJF|1|R1|G|1860
*
9NJF|1|R1|U|1882
9NJF|1|R1|U|1883
9NJF|1|R1|G|1884
9NJF|1|R1|A|1885
9NJF|1|R1|U|1886
9NJF|1|R1|C|1887
9NJF|1|R1|G|1888
9NJF|1|R1|A|1889
9NJF|1|R1|A|1890
9NJF|1|R1|G|1891

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1

Chain Y

Probable ATP-binding protein YbiT