IL_9NJF_096

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

9NJF|1|R1|G|2576, 9NJF|1|R1|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_096 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.1113

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9NJF|1|R1|C|2510
9NJF|1|R1|U|2511
9NJF|1|R1|C|2512
*
9NJF|1|R1|G|2574
9NJF|1|R1|C|2575
9NJF|1|R1|G|2576
9NJF|1|R1|A|2577
9NJF|1|R1|G|2578

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L3

Chain 32

50S ribosomal protein L32