IL_9NJF_101

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_101 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.1028

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9NJF|1|R1|C|2652
9NJF|1|R1|U|2653
9NJF|1|R1|A|2654
9NJF|1|R1|G|2655
9NJF|1|R1|U|2656
9NJF|1|R1|A|2657
9NJF|1|R1|C|2658
*
9NJF|1|R1|G|2663
9NJF|1|R1|G|2664
9NJF|1|R1|A|2665
9NJF|1|R1|C|2666
9NJF|1|R1|C|2667
9NJF|1|R1|G|2668

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein uL6