IL_9NJF_113
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NJF_113 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.0771
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9NJF|1|R2|C|71
9NJF|1|R2|G|72
9NJF|1|R2|A|73
9NJF|1|R2|U|74
9NJF|1|R2|G|75
9NJF|1|R2|G|76
9NJF|1|R2|U|77
9NJF|1|R2|A|78
9NJF|1|R2|G|79
*
9NJF|1|R2|C|97
9NJF|1|R2|G|98
9NJF|1|R2|A|99
9NJF|1|R2|G|100
9NJF|1|R2|A|101
9NJF|1|R2|G|102
9NJF|1|R2|U|103
9NJF|1|R2|A|104
9NJF|1|R2|G|105
Current chains
- Chain R2
- 5S ribosomal RNA
Nearby chains
- Chain 16
- 50S ribosomal protein L16
- Chain 25
- Large ribosomal subunit protein bL25
- Chain R1
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: