IL_9NJF_120

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAAC*GA

Length

6 nucleotides

Bulged bases

9NJF|1|R3|A|71, 9NJF|1|R3|A|72

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_120 not in the Motif Atlas

Geometric match to IL_9DFE_073

Geometric discrepancy: 0.3596

The information below is about IL_9DFE_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

9NJF|1|R3|U|70
9NJF|1|R3|A|71
9NJF|1|R3|A|72
9NJF|1|R3|C|73
*
9NJF|1|R3|G|97
9NJF|1|R3|A|98

Current chains

Chain R3

16S ribosomal RNA

Nearby chains