IL_9NJF_136

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

9NJF|1|R3|A|532, 9NJF|1|R3|U|534, 9NJF|1|R3|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_136 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.2848

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9NJF|1|R3|G|515
9NJF|1|R3|U|516
9NJF|1|R3|G|517
9NJF|1|R3|C|518
9NJF|1|R3|C|519
9NJF|1|R3|A|520
9NJF|1|R3|G|521
*
9NJF|1|R3|C|528
9NJF|1|R3|G|529
9NJF|1|R3|G|530
9NJF|1|R3|U|531
9NJF|1|R3|A|532
9NJF|1|R3|A|533
9NJF|1|R3|U|534
9NJF|1|R3|A|535
9NJF|1|R3|C|536

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sc

Small ribosomal subunit protein uS3

Chain sd

30S ribosomal protein S4

Chain sl

Small ribosomal subunit protein uS12