IL_9NJF_144
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UAGAG*UGGA
- Length
- 9 nucleotides
- Bulged bases
- 9NJF|1|R3|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NJF_144 not in the Motif Atlas
- Homologous match to IL_5J7L_033
- Geometric discrepancy: 0.1062
- The information below is about IL_5J7L_033
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
9NJF|1|R3|U|662
9NJF|1|R3|A|663
9NJF|1|R3|G|664
9NJF|1|R3|A|665
9NJF|1|R3|G|666
*
9NJF|1|R3|U|740
9NJF|1|R3|G|741
9NJF|1|R3|G|742
9NJF|1|R3|A|743
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain sf
- 30S ribosomal protein S6, non-modified isoform
- Chain so
- Small ribosomal subunit protein uS15
- Chain sr
- 30S ribosomal protein S18
- Chain su
- Small ribosomal subunit protein bS21
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