IL_9NJF_147

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_147 not in the Motif Atlas

Homologous match to IL_4LFB_032

Geometric discrepancy: 0.108

The information below is about IL_4LFB_032

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

9NJF|1|R3|G|774
9NJF|1|R3|G|775
9NJF|1|R3|G|776
9NJF|1|R3|A|777
9NJF|1|R3|G|778
*
9NJF|1|R3|U|804
9NJF|1|R3|C|805

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain R1

Large subunit ribosomal RNA; LSU rRNA

Chain sk

Small ribosomal subunit protein uS11