IL_9NJF_149

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_149 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0978

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

9NJF|1|R3|G|887
9NJF|1|R3|G|888
9NJF|1|R3|A|889
9NJF|1|R3|G|890
9NJF|1|R3|U|891
9NJF|1|R3|A|892
9NJF|1|R3|C|893
9NJF|1|R3|G|894
*
9NJF|1|R3|U|905
9NJF|1|R3|A|906
9NJF|1|R3|A|907
9NJF|1|R3|A|908
9NJF|1|R3|A|909
9NJF|1|R3|C|910

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12